Arnold CD, Gerlach D, Spies D, Matts JA, Sytnikova YA, Pagani M, Lau NC, Stark A. Quantitative genome-wide enhancer activity maps for five Drosophila species show functional enhancer conservation and turnover during cis-regulatory evolution. Nat Genet. 2014 Jun 8 [Epub ahead of print]. Pubmed 24908250.

• Tracks on the UCSC Genome Browser

• Raw sequencing data (also on GEO)

  STARR-seq (cDNA), S2
  Dmel S2 STARR-seq replicate 1, paired-end read 1 [416M]
  Dmel S2 STARR-seq replicate 1, paired-end read 2 [432M]
  Dmel S2 STARR-seq replicate 2, paired-end read 1 [1.3G]
  Dmel S2 STARR-seq replicate 2, paired-end read 2 [1.4G]

  Dyak S2 STARR-seq replicate 1, paired-end read 1 [1.7G]
  Dyak S2 STARR-seq replicate 1, paired-end read 2 [1.8G]
  Dyak S2 STARR-seq replicate 2, paired-end read 1 [342M]
  Dyak S2 STARR-seq replicate 2, paired-end read 2 [363M]

  Dana S2 STARR-seq replicate 1, paired-end read 1 [755M]
  Dana S2 STARR-seq replicate 1, paired-end read 2 [816M]
  Dana S2 STARR-seq replicate 2, paired-end read 1 [626M]
  Dana S2 STARR-seq replicate 2, paired-end read 2 [662M]

  Dpse S2 STARR-seq replicate 1, paired-end read 1 [1.4G]
  Dpse S2 STARR-seq replicate 1, paired-end read 2 [1.6G]
  Dpse S2 STARR-seq replicate 2, paired-end read 1 [759M]
  Dpse S2 STARR-seq replicate 2, paired-end read 2 [803M]

  Dwil S2 STARR-seq replicate 1, paired-end read 1 [976M]
  Dwil S2 STARR-seq replicate 1, paired-end read 2 [1.1G]
  Dwil S2 STARR-seq replicate 2, paired-end read 1 [386M]
  Dwil S2 STARR-seq replicate 2, paired-end read 2 [407M]

  STARR-seq (cDNA), OSC
  Dmel OSC STARR-seq replicate 1, paired-end read 1 [651M]
  Dmel OSC STARR-seq replicate 1, paired-end read 2 [784M]
  Dmel OSC STARR-seq replicate 2, paired-end read 1 [635M]
  Dmel OSC STARR-seq replicate 2, paired-end read 2 [748M]

  Dyak OSC STARR-seq replicate 1, paired-end read 1 [65M]
  Dyak OSC STARR-seq replicate 1, paired-end read 2 [71M]
  Dyak OSC STARR-seq replicate 2, paired-end read 1 [58M]
  Dyak OSC STARR-seq replicate 2, paired-end read 2 [63M]

  Dana OSC STARR-seq replicate 1, paired-end read 1 [68M]
  Dana OSC STARR-seq replicate 1, paired-end read 2 [74M]
  Dana OSC STARR-seq replicate 2, paired-end read 1 [60M]
  Dana OSC STARR-seq replicate 2, paired-end read 2 [66M]

  STARR-seq (input)
  Dmel Input, paired-end read 1 [1022M]
  Dmel Input, paired-end read 2 [1.2G]

  Dyak Input, paired-end read 1 [1.2G]
  Dyak Input, paired-end read 2 [1.3G]

  Dana Input, paired-end read 1 [585M]
  Dana Input, paired-end read 2 [616M]

  Dpse Input, paired-end read 1 [1.4G]
  Dpse Input, paired-end read 2 [1.5G]

  Dwil Input, paired-end read 1 [1.2G]
  Dwil Input, paired-end read 2 [1.2G]

  RNA-seq follicle cells
  Dmel RNA-seq [1.4G]
  Dyak RNA-seq [1.1G]

  Supplementary data
  

  Supplementary data in the Nature Genetics website: http://dx.doi.org/10.1038/ng.3009 Supplementary Data Set 1 [3.4M]
  Table 02 [80K]
  Table 04 [500K]

• Related Data (unpublished)
  Dsim STARR-seq replicate 1, paired-end read 1
  Dsim STARR-seq replicate 1, paired-end read 2

  Dsim STARR-seq replicate 2a, paired-end read 1
  Dsim STARR-seq replicate 2a, paired-end read 2

  Dsim STARR-seq replicate 2b, paired-end read 1
  Dsim STARR-seq replicate 2b, paired-end read 2

  Dsim input, paired-end read 1
  Dsim input, paired-end read 2