Arnold CD, Gerlach D, Stelzer C, Boryń LM, Rath M, Stark A. Genome-wide quantitative enhancer activity maps identified by STARR-seq. Science 2013 Mar 1;339(6123):1074-1077. Pubmed 23328393.
- Tracks on the UCSC Genome Browser
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Online supplemental material (also on GEO)
STARR-seq
S2 STARR-seq replicate 1, paired-end read 1 [509 MB]
S2 STARR-seq replicate 1, paired-end read 2 [525 MB]
S2 STARR-seq replicate 2, paired-end read 1 [1.3 GB]
S2 STARR-seq replicate 2, paired-end read 2 [1.4 GB]
STARR-seq input lib5.2, paired-end read 1 [1.1 GB]
STARR-seq input lib5.2, paired-end read 2 [1.2 GB]OSC STARR-seq replicate 1, paired-end read 1 [684 MB]
OSC STARR-seq replicate 1, paired-end read 2 [823 MB]
OSC STARR-seq replicate 2, paired-end read 1 [667 MB]
OSC STARR-seq replicate 2, paired-end read 2 [785 MB]
STARR-seq input lib500, paired-end read 1 [775 MB]
STARR-seq input lib500, paired-end read 2 [808 MB]HeLa STARR-seq [1.2 GB]
HeLa STARR-seq input [1.2 GB]S2 HSP70 STARR-seq replicate 1, paired-end read 1 [1.2 GB]
S2 HSP70 STARR-seq replicate 1, paired-end read 2 [1.3 GB]
STARR-seq HSP70 input, paired-end read 1 [1.3 GB]
STARR-seq HSP70 input, paired-end read 2 [1.3 GB]STARR-seq input libraries pre and post transfection
STARR-seq input lib500 replicate 2, single-end reads [472 MB]
STARR-seq input lib500 post transfection, single-end reads [2.9 GB]RNA-seq
S2 RNA-seq replicate 1 [1.6 GB]
S2 RNA-seq replicate 2 [1.9 GB]OSC RNA-seq replicate 1 [1.7 GB]
OSC RNA-seq replicate 2 [1.6 GB]DHS-seq
S2 DHS-seq replicate 1 [333 MB]
S2 DHS-seq replicate 2 [253 MB]
S2 DHS-seq input [240 MB]OSC DHS-seq replicate 1 [174 MB]
OSC DHS-seq replicate 2 [503 MB]
OSC DHS-seq input [1.2 GB]Processed peaks files and RPKM values
STARR-seq peaks, DHS-seq peaks, RPKM values [1.7 MB]STARR-seq screening and luciferase validation vectors (order from Addgene)
DSCP STARR-seq (sbd|gbk)
hsp70 STARR-seq (sbd|gbk)
human STARR-seq (sbd|gbk)
luciferase/DSCP (sbd|gbk)
luciferase/human (sbd|gbk)