Haberle V*, Arnold CD*, Pagani M, Rath M, Schernhuber K, Stark A. Transcriptional cofactors display specificity for distinct types of core promoters. Nature 2019, May 15. Pubmed 31092928

FLY (D. melanogaster) ENHANCER STAP-seq

• Tracks on the UCSC Genome Browser

• Processed data tables (also on NCBI GEO (GSE116197))

  List of 72,000 CP candidates included in the STAP-seq library [17M]
  Unique tagcounts (not normalized) for all CP candidates with different enhancers [2.9M]
  Normalized tagcounts (normalized to spike-in) for all CP candidates with different enhancers [4.1M]

• Raw sequencing data (also on NCBI GEO (GSE116197))
  Note that the first 8 nucleotides of the read 1 are UMI (unique molecular identifier) and should be removed before mapping (but kept for correct counting of the unique initiation events after mapping).

  zfh1 enhancer (developmental)
  zfh1 enhancer S2 cells STAP-seq Rep1, paired-end read 1 [464M]
  zfh1 enhancer S2 cells STAP-seq Rep1, paired-end read 2 [468M]
  zfh1 enhancer S2 cells STAP-seq Rep2, paired-end read 1 [414M]
  zfh1 enhancer S2 cells STAP-seq Rep2, paired-end read 2 [421M]

  ssp3 enhancer (housekeeping)
  ssp3 enhancer S2 cells STAP-seq, paired-end read 1 [454M]
  ssp3 enhancer S2 cells STAP-seq, paired-end read 2 [466M]

  no enhancer (control)
  no enhancer S2 cells STAP-seq, paired-end read 1 [485M]
  no enhancer S2 cells STAP-seq, paired-end read 2 [491M]

  input CP library
  Input zfh1 enhancer CP library, paired-end read 1 [247M]
  Input zfh1 enhancer CP library, paired-end read 2 [239M]
  Input ssp3 enhancer CP library, paired-end read 1 [251M]
  Input ssp3 enhancer CP library, paired-end read 2 [253M]
  Input no enhancer CP library, paired-end read 1 [244M]
  Input no enhancer CP library, paired-end read 2 [236M]