Shlyueva D, Stelzer C, Gerlach D, Yáñez-Cuna JO, Rath M, Boryń ŁM, Arnold CD, Stark A. Hormone-responsive enhancer-activity maps reveal predictive motifs, indirect repression and targeting of closed chromatin. Molecular Cell, Vol. 54, Issue 1, p.180-192. Pubmed 24685159.
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STARR-seq (S2)
S2 STARR-seq no ecdysone replicate 1: FASTQ 102M
S2 STARR-seq no ecdysone replicate 2: FASTQ 625M
S2 STARR-seq with ecdysone replicate 1: FASTQ 214M
S2 STARR-seq with ecdysone replicate 2: FASTQ 379M
STARR-seq input: FASTQ 631M
STARR-seq (OSC)
OSC STARR-seq no ecdysone replicate 1: FASTQ 131M
OSC STARR-seq no ecdysone replicate 2: FASTQ 703M
OSC STARR-seq with ecdysone replicate 1: FASTQ 137M
OSC STARR-seq with ecdysone replicate 2: FASTQ 275M
STARR-seq input: FASTQ 2.3G
RNA-seq
S2 RNA-seq no ecdysone replicate 1: FASTQ 621M
S2 RNA-seq no ecdysone replicate 2: FASTQ 907M
S2 RNA-seq with ecdysone replicate 1: FASTQ 1.2G
S2 RNA-seq with ecdysone replicate 2: FASTQ 1.5G
DHS-seq
S2 DHS-seq no ecdysone replicate 1: FASTQ 1.1G
S2 DHS-seq no ecdysone replicate 2: FASTQ 1.2G
S2 DHS-seq with ecdysone replicate 1: FASTQ 1.1G
S2 DHS-seq with ecdysone replicate 2: FASTQ 1.2G
S2 DHS-seq input: FASTQ 240M
ChIP-seq EcR
S2 ChIP-seq no ecdysone anti-EcR: FASTQ 1.6G
S2 ChIP-seq no ecdysone anti-EcR: FASTQ 1.6G
S2 ChIP-seq with ecdysone anti-EcR: FASTQ 1.4G
S2 ChIP-seq with ecdysone anti-EcR: FASTQ 1.8G
S2 ChIP-seq input: FASTQ 1.3G
Processed peaks files and RPKM values for replicates
S2 and OSC STARR-seq peaks, DHS-seq peaks, ChIP-seq peaks, RPKM values: processed.tar.gz 2.3M
Processed peaks files and RPKM values for merged files
S2 STARR-seq peaks S2 STARR-seq peaks
S2 RNA-seq RPKM S2 RNA-seq RPKM
Links to data on GEO [GSE47691]. Previously published data from Arnold et al. 2013 on GEO [GSE40739]