Franz A, Shlyueva D, Brunner E, Stark A, Basler K. Probing the canonicity of the Wnt/wingless signaling pathway. PLoS Genetics, 2017 Apr 3;13(4):e1006700. Pubmed 28369070.
Tracks on UCSC browser
STARR-seq (Kc Pan KO cells)
STARR-seq Pangolin mutated Kc167 cells with DMSO replicate 1, paired-end read 1 [200M]
STARR-seq Pangolin mutated Kc167 cells with DMSO replicate 1, paired-end read 2 [213M]
STARR-seq Pangolin mutated Kc167 cells with DMSO replicate 2, paired-end read 1 [172M]
STARR-seq Pangolin mutated Kc167 cells with DMSO replicate 2, paired-end read 2 [184M]
STARR-seq Pangolin mutated Kc167 cells with CHIR99021 inhibitor replicate 1, paired-end read 1 [209M]
STARR-seq Pangolin mutated Kc167 cells with CHIR99021 inhibitor replicate 1, paired-end read 2 [222M]
STARR-seq Pangolin mutated Kc167 cells with CHIR99021 inhibitor replicate 2, paired-end read 1 [168M]
STARR-seq Pangolin mutated Kc167 cells with CHIR99021 inhibitor replicate 2, paired-end read 2 [180M]
STARR-seq (Kc cells)
STARR-seq WT Kc167 cells with DMSO replicate 1, paired-end read 1 [86M]
STARR-seq WT Kc167 cells with DMSO replicate 1, paired-end read 2 [87M]
STARR-seq WT Kc167 cells with DMSO replicate 2, paired-end read 1 [88M]
STARR-seq WT Kc167 cells with DMSO replicate 2, paired-end read 2 [89M]
STARR-seq WT Kc167 cells with CHIR99021 inhibitor replicate 1, paired-end read 1 [79M]
STARR-seq WT Kc167 cells with CHIR99021 inhibitor replicate 1, paired-end read 2 [80M]
STARR-seq WT Kc167 cells with CHIR99021 inhibitor replicate 2, paired-end read 1 [80M]
STARR-seq WT Kc167 cells with CHIR99021 inhibitor replicate 2, paired-end read 2 [81M]
STARR-seq input
STARR-seq input for Kc and Pan KO screens, paired-end read 1 [730M]
STARR-seq input for Kc and Pan KO screens, paired-end read 2 [739M]
STARR-seq peaks files
Note: headers for peak files as follows: chr, peak_summit, STARRseq_count, input_count, STARRseq_total, input_total, enrichment, corrected_enrichment, p-value
STARR-seq peaks Kc DMSO [3.1M]
STARR-seq peaks Kc CHIR99021 [3.1M]
STARR-seq peaks Kc Pan KO DMSO [2.8M]
STARR-seq peaks Kc Pan KO CHIR99021 [2.7M]
STARR-seq peaks before and after treatment combined
Note: headers for the files as follows: chr, peak_summit, peak_summit_plus1, enrichment_DMSO, p-value_DMSO, enrichment_CHIR, p-value_CHIR
STARR-seq combined peaks Kc DMSO vs CHIR99021 [465K]
STARR-seq combined peaks Pan KO DMSO vs CHIR99021 [531K]
Links to data on GEO [GSE96542].