Zabidi MA*, Arnold CD*, Schernhuber K, Pagani M, Rath M, Frank O, Stark A. Enhancer–core-promoter specificity separates developmental and housekeeping gene regulation. Nature 2014. Pubmed 25517091.
-
Tracks on the UCSC Genome Browser
-
Raw sequencing data (also on GEO (GSE57876) and (GSE40739)
Genome-wide STARR-seq S2
RpS12(hkCP) S2 STARR-seq replicate 1, paired-end read 1 [104M]
RpS12(hkCP) S2 STARR-seq replicate 1, paired-end read 2 [110M]
RpS12(hkCP) S2 STARR-seq replicate 2, paired-end read 1 [260M]
RpS12(hkCP) S2 STARR-seq replicate 2, paired-end read 2 [273M]DSCP(dCP) S2 STARR-seq replicate 1, paired-end read 1 [509M]
DSCP(dCP) S2 STARR-seq replicate 1, paired-end read 2 [525M]
DSCP(dCP) S2 STARR-seq replicate 2, paired-end read 1 [1.3G]
DSCP(dCP) S2 STARR-seq replicate 2, paired-end read 2 [1.4G]eEF1delta S2 STARR-seq replicate 1, paired-end read 1 [466M]
eEF1delta S2 STARR-seq replicate 1, paired-end read 2 [487M]
eEF1delta S2 STARR-seq replicate 2, paired-end read 1 [514M]
eEF1delta S2 STARR-seq replicate 2, paired-end read 2 [529M]x16 S2 STARR-seq replicate 1, paired-end read 1 [374M]
x16 S2 STARR-seq replicate 1, paired-end read 2 [378M]
x16 S2 STARR-seq replicate 2, paired-end read 1 [396M]
x16 S2 STARR-seq replicate 2, paired-end read 2 [399M]NipB S2 STARR-seq replicate 1, paired-end read 1 [467M]
NipB S2 STARR-seq replicate 1, paired-end read 2 [484M]
NipB S2 STARR-seq replicate 2, paired-end read 1 [395M]
NipB S2 STARR-seq replicate 2, paired-end read 2 [413M]pnr S2 STARR-seq, paired-end read 1 [512M]
pnr S2 STARR-seq, paired-end read 2 [521M]Genome-wide STARR-seq OSC
RpS12(hkCP) OSC STARR-seq replicate 1, paired-end read 1 [622M]
RpS12(hkCP) OSC STARR-seq replicate 1, paired-end read 2 [663M]
RpS12(hkCP) OSC STARR-seq replicate 2, paired-end read 1 [176M]
RpS12(hkCP) OSC STARR-seq replicate 2, paired-end read 2 [195M]DSCP(dCP) OSC STARR-seq replicate 1, paired-end read 1 [684M]
DSCP(dCP) OSC STARR-seq replicate 1, paired-end read 2 [823M]
DSCP(dCP) OSC STARR-seq replicate 2, paired-end read 1 [667M]
DSCP(dCP) OSC STARR-seq replicate 2, paired-end read 2 [785M]Genome-wide input
RpS12(hkCP) input, paired-end read 1 [1018M]
RpS12(hkCP) input, paired-end read 2 [1.1G]DSCP(dCP) input (for S2), paired-end read 1 [1.1G]
DSCP(dCP) input(for S2), paired-end read 2 [1.2G]DSCP(dCP) input (for OSC), paired-end read 1 [775M]
DSCP(dCP) input(for OSC), paired-end read 2 [808M]eEF1delta input, paired-end read 1 [2.0G]
eEF1delta input, paired-end read 2 [2.1G]x16 input, paired-end read 1 [1.5G]
x16 input, paired-end read 2 [1.5G]NipB input, paired-end read 1 [1.8G]
NipB input, paired-end read 2 [1.8G]pnr input, paired-end read 1 [1.7G]
pnr input, paired-end read 2 [1.7G]Focused BAC STARR-seq S2
RpS12(hkCP) S2 STARR-seq, paired-end read 1 [53M]
RpS12(hkCP) S2 STARR-seq, paired-end read 2 [56M]DSCP(dCP) S2 STARR-seq, paired-end read 1 [47M]
DSCP(dCP) S2 STARR-seq, paired-end read 2 [47M]eEF1delta S2 STARR-seq, paired-end read 1 [75M]
eEF1delta S2 STARR-seq, paired-end read 2 [80M]x16 S2 STARR-seq, paired-end read 1 [132M]
x16 S2 STARR-seq, paired-end read 2 [138M]NipB S2 STARR-seq, paired-end read 1 [67M]
NipB S2 STARR-seq, paired-end read 2 [70M]pnr S2 STARR-seq, paired-end read 1 [61M]
pnr S2 STARR-seq, paired-end read 2 [63M]hsp70 S2 STARR-seq, paired-end read 1 [44M]
hsp70 S2 STARR-seq, paired-end read 2 [45M]eve S2 STARR-seq, paired-end read 1 [46M]
eve S2 STARR-seq, paired-end read 2 [47M]eve(long) S2 STARR-seq, paired-end read 1 [42M]
eve(long) S2 STARR-seq, paired-end read 2 [43M]Focused BAC input
RpS12(hkCP) input, paired-end read 1 [60M]
RpS12(hkCP) input, paired-end read 2 [64M]DSCP(dCP) input, paired-end read 1 [103M]
DSCP(dCP) input, paired-end read 2 [110M]eEF1delta input, paired-end read 1 [117M]
eEF1delta input, paired-end read 2 [125M]x16 input, paired-end read 1 [49M]
x16 input, paired-end read 2 [52M]NipB input, paired-end read 1 [128M]
NipB input, paired-end read 2 [141M]pnr input, paired-end read 1 [92M]
pnr input, paired-end read 2 [100M]eve input, paired-end read 1 [48M]
eve input, paired-end read 2 [51M]eve(long) input, paired-end read 1 [72M]
eve(long) input, paired-end read 2 [76M]